THE PRETERM INFANT MICROBIOME: CHALLENGES AND OPPORTUNITIES

Nazmiye Bengü Karaçağlar

Ankara Bilkent City Hospital, Department of Neonatology, Ankara, Türkiye

Karaçağlar NB. The Preterm Infant Microbiome: Challenges And Opportunities. Melek İM, Aydoğan S, eds. Microbiota. 1st ed. Ankara: Türkiye Klinikleri; 2025. p.79-88.

ABSTRACT

Preterm birth is an important risk factor for neonatal morbidity and mortality. Despite advances in maternal, antenatal, and postnatal care, preterm birth can still lead to unfavorable outcomes. The risk of death and disease in these infants is primarily due to the anatomic and functional immaturity of their organ systems. The gut microbiota is one of the main factors modulating the development and function of the immune system, which is an important component of the organ systems. The gut microbiota that forms in the first years of life has important impacts on growth, development, and long-term health. Recent studies have focused on alterations in the gut microbiota in preterm infants as one of the causes of prematurity-related complications and poor neurological outcomes. While preterm birth itself has an effect on the gut microbiota, many other individual and environmental factors can alter the microbiota profile of preterm infants. Knowing the microbiota characteristics and factors that cause dysbiosis in this patient group is important in order to regulate negative modifiable factors or intervene quickly to reverse their negative effects. Therefore, this chapter discusses possible determinants of microbiota development in preterm infants and their differences from term infants, the effects of antenatal/natal/ postnatal factors on the microbiota, and suggestions to regulate and support the microbiota and reverse dysbiosis.

Keywords: Preterm infant; Gut microbiota; Dysbiosis; Probiotic

Referanslar

  1. March of Dimes, pmNch, Save the children, Who. Born Too Soon: The Global action report on preterm Birth. eds cp howson, mV Kinney, Je lawn. World health organization. Geneva, 2012. [Link]
  2. Ohuma EO, Moller AB, Bradley E, Chakwera S, Hussain-Alkhateeb L, Lewin A, et al. National, regional, and global estimates of preterm birth in 2020, with trends from 2010: a systematic analysis. Lancet. 2023 Oct 7;402(10409):1261-1271. [Crossref]  [PubMed]
  3. JE, Rudan I, Campbell H, Cibulskis R, Li M, Mathers C, Black RE; Child Health Epidemiology Reference Group of WHO and UNICEF. Global, regional, and national causes of child mortality: an updated systematic analysis for 2010 with time trends since 2000. Lancet. 2012 Jun 9;379(9832):2151-61. [Crossref]  [PubMed]
  4. Teune MJ, Bakhuizen S, Gyamfi Bannerman C, Opmeer BC, van Kaam AH, van Wassenaer AG, et al. A systematic review of severe morbidity in infants born late preterm. Am J Obstet Gynecol. 2011 Oct;205(4):374.e1-9. [Crossref]  [PubMed]
  5. Fernández de Gamarra-Oca L, Ojeda N, Gómez-Gastiasoro A, Peña J, Ibarretxe-Bilbao N, García-Guerrero MA, Loureiro B, et al. Long-Term Neurodevelopmental Outcomes after Moderate and Late Preterm Birth: A Systematic Review. J Pediatr. 2021 Oct;237:168-176.e11. [Crossref]  [PubMed]
  6. Stoll BJ, Hansen NI, Bell EF, Shankaran S, Laptook AR, Walsh MC, et al. Neonatal outcomes of extremely preterm infants from the NICHD Neonatal Research Network. Pediatrics. 2010 Sep;126(3):443-56. [Crossref]  [PubMed]  [PMC]
  7. Sarda SP, Sarri G, Siffel C. Global prevalence of longterm neurodevelopmental impairment following extremely preterm birth: a systematic literature review. J Int Med Res. 2021 Jul;49(7):3000605211028026. [Link]
  8. Sankar SA, Lagier JC, Pontarotti P, Raoult D, Fournier PE. The human gut microbiome, a taxonomic conundrum. Syst Appl Microbiol. 2015 Jun;38(4):276-86. [Crossref]  [PubMed]
  9. Jandhyala SM, Talukdar R, Subramanyam C, Vuyyuru H, Sasikala M, Nageshwar Reddy D. Role of the normal gut microbiota. World J Gastroenterol. 2015 Aug 7;21(29):8787-803. [Crossref]  [PubMed]  [PMC]
  10. Xiang Q, Yan X, Shi W, Li H, Zhou K. Early gut microbiota intervention in premature infants: Application perspectives. J Adv Res. 2023 Sep;51:59-72. [Crossref]  [PubMed]  [PMC]
  11. Sharlandjieva V, Beristain AG, Terry J. Assessment of the human placental microbiome in early pregnancy. Front Med (Lausanne). 2023 Jan 19;10:1096262. [Crossref]  [PubMed]  [PMC]
  12. Winters AD, Romero R, Greenberg JM, Galaz J, Shaffer ZD, Garcia-Flores V, et al. Does the Amniotic Fluid of Mice Contain a Viable Microbiota? Front Immunol. 2022 Feb 28;13:820366. [Crossref]  [PubMed]  [PMC]
  13. Younge N, McCann JR, Ballard J, Plunkett C, Akhtar S, Araújo-Pérez F, et al. Fetal exposure to the maternal microbiota in humans and mice. JCI Insight. 2019 Oct 3;4(19):e127806. [Crossref]  [PubMed]  [PMC]
  14. Mishra A, Lai GC, Yao LJ, Aung TT, Shental N, Rotter-Maskowitz A, et al. Microbial exposure during early human development primes fetal immune cells. Cell. 2021 Jun 24;184(13):3394-3409.e20. [Link]
  15. Bresesti I, Salvatore S, Valetti G, Baj A, Giaroni C, Agosti M. The Microbiota-Gut Axis in Premature Infants: Physio-Pathological Implications. Cells. 2022 Jan 23;11(3):379. [Crossref]  [PubMed]  [PMC]
  16. Henderickx JGE, Zwittink RD, van Lingen RA, Knol J, Belzer C. The Preterm Gut Microbiota: An Inconspicuous Challenge in Nutritional Neonatal Care. Front Cell Infect Microbiol. 2019 Apr 2;9:85. [Crossref]  [PubMed]  [PMC]
  17. Pantazi AC, Balasa AL, Mihai CM, Chisnoiu T, Lupu VV, Kassim MAK, et al. Development of Gut Microbiota in the First 1000 Days after Birth and Potential Interventions. Nutrients. 2023 Aug 20;15(16):3647. [Crossref]  [PubMed]  [PMC]
  18. Cuna A, Morowitz MJ, Ahmed I, Umar S, Sampath V. Dynamics of the preterm gut microbiome in health and disease. Am J Physiol Gastrointest Liver Physiol. 2021 Apr 1;320(4):G411-G419. [Crossref]  [PubMed]  [PMC]
  19. Korpela K, Blakstad EW, Moltu SJ, Strømmen K, Nakstad B, Rønnestad AE, et al. Intestinal microbiota development and gestational age in preterm neonates. Sci Rep. 2018 Feb 6;8(1):2453. [Crossref]  [PubMed]  [PMC]
  20. Commare CE, Tappenden KA. Development of the infant intestine: implications for nutrition support. Nutr Clin Pract. 2007 Apr;22(2):159-73. [Crossref]  [PubMed]
  21. Raul F, Lacroix B, Aprahamian M. Longitudinal distribution of brush border hydrolases and morphological maturation in the intestine of the preterm infant. Early Hum Dev. 1986 Apr;13(2):225-34. [Crossref]  [PubMed]
  22. Dumont RC, Rudolph CD. Development of gastrointestinal motility in the infant and child. Gastroenterol Clin North Am. 1994 Dec;23(4):655-71. [Crossref]  [PubMed]
  23. Di Mauro A, Neu J, Riezzo G, Raimondi F, Martinelli D, Francavilla R, et al. Gastrointestinal function development and microbiota. Ital J Pediatr. 2013 Feb 24;39:15. [Link]
  24. Yu Y, Lu L, Sun J, Petrof EO, Claud EC. Preterm infant gut microbiota affects intestinal epithelial development in a humanized microbiome gnotobiotic mouse model. Am J Physiol Gastrointest Liver Physiol. 2016 Sep 1;311(3):G521-32. [Crossref]  [PubMed]  [PMC]
  25. Melville JM, Moss TJ. The immune consequences of preterm birth. Front Neurosci. 2013 May 21;7:79. [Crossref]  [PubMed]  [PMC]
  26. Gensollen T, Iyer SS, Kasper DL, Blumberg RS. How colonization by microbiota in early life shapes the immune system. Science. 2016 Apr 29;352(6285):539-44. [Crossref]  [PubMed]  [PMC]
  27. Kabat AM, Srinivasan N, Maloy KJ. Modulation of immune development and function by intestinal microbiota. Trends Immunol. 2014 Nov;35(11):507-17. [Link]
  28. Tamburini S, Shen N, Wu HC, Clemente JC. The microbiome in early life: implications for health outcomes. Nat Med. 2016 Jul 7;22(7):713-22. [Crossref]  [PubMed]
  29. Collado MC, Cernada M, Neu J, Pérez-Martínez G, Gormaz M, Vento M. Factors influencing gastrointestinal tract and microbiota immune interaction in preterm infants. Pediatr Res.2015 Jun;77(6):726-31. [Crossref]  [PubMed]
  30. Shao Y, Forster SC, Tsaliki E, Vervier K, Strang A, Simpson N,et al. Stunted microbiota and opportunistic pathogen colonization in caesarean-section birth. Nature. 2019 Oct;574(7776):117-121.Epub 2019 Sep 18. [Crossref]  [PubMed]  [PMC]
  31. Zhou P, Zhou Y, Liu B, Jin Z, Zhuang X, Dai W, et al. Perinatal Antibiotic Exposure Affects the Transmission between Maternal and Neonatal Microbiota and Is Associated with Early-Onset Sepsis. mSphere. 2020 Feb 19;5(1):e00984-19. [Link]
  32. Martinez de Tejada B. Antibiotic use and misuse during pregnancy and delivery: benefits and risks. Int J Environ Res Public Health. 2014 Aug 7;11(8):7993-8009. [Crossref]  [PubMed]  [PMC]
  33. Chernikova DA, Koestler DC, Hoen AG, Housman ML, Hibberd PL, Moore JH, et al. Fetal exposures and perinatal influences on the stool microbiota of premature infants. J Matern Fetal Neonatal Med. 2016;29(1):99-105. [Crossref]  [PubMed]  [PMC]
  34. Hermansson H, Kumar H, Collado MC, Salminen S, Isolauri E, Rautava S. Breast Milk Microbiota Is Shaped by Mode of Delivery and Intrapartum Antibiotic Exposure. Front Nutr. 2019 Feb 4;6:4. [Crossref]  [PubMed]  [PMC]
  35. Chen T, Qin Y, Chen M, Zhang Y, Wang X, Dong T, et al. Gestational diabetes mellitus is associated with the neonatal gut microbiota and metabolome. BMC Med. 2021 May 27;19(1):120. [Crossref]  [PubMed]  [PMC]
  36. Drell T, Lutsar I, Stšepetova J, Parm U, Metsvaht T, Ilmoja ML, et al. The development of gut microbiota in critically ill extremely low birth weight infants assessed with 16S rRNA gene based sequencing. Gut Microbes. 2014 May-Jun;5(3):304-12. [Crossref]  [PubMed]  [PMC]
  37. Fouhy F, Guinane CM, Hussey S, Wall R, Ryan CA, Dempsey EM, et al. High-throughput sequencing reveals the incomplete, short-term recovery of infant gut microbiota following parenteral antibiotic treatment with ampicillin and gentamicin. Antimicrob Agents Chemother. 2012 Nov;56(11):5811-20. [Crossref]  [PubMed]  [PMC]
  38. 38. Zwittink RD, Renes IB, van Lingen RA, van Zoeren-Grobben D, Konstanti P, Norbruis OF, et al. Association between duration of intravenous antibiotic administration and early-life microbiota development in late-preterm infants. Eur J Clin Microbiol Infect Dis. 2018 Mar;37(3):475-483. [Crossref]  [PubMed]  [PMC]
  39. Rooney AM, Timberlake K, Brown KA, Bansal S, Tomlinson C, Lee KS, et al. Each Additional Day of Antibiotics Is Associated With Lower Gut Anaerobes in Neonatal Intensive Care Unit Patients. Clin Infect Dis. 2020 Jun 10;70(12):2553-2560. [Crossref]  [PubMed]  [PMC]
  40. Jia J, Xun P, Wang X, He K, Tang Q, Zhang T, et al. Impact of Postnatal Antibiotics and Parenteral Nutrition on the Gut Microbiota in Preterm Infants During Early Life. JPEN J Parenter Enteral Nutr. 2020 May;44(4):639-654. [Crossref]  [PubMed]
  41. Miyasaka EA, Feng Y, Poroyko V, Falkowski NR, Erb-Downward J, Gillilland MG 3rd, et al. Total parenteral nutrition-associated lamina propria inflammation in mice is mediated by a MyD88-dependent mechanism. J Immunol. 2013 Jun15;190(12):6607-15. [Crossref]  [PubMed]  [PMC]
  42. Adamczak AM, Werblińska A, Jamka M, Walkowiak J. Maternal-Foetal/Infant Interactions-Gut Microbiota and Immune Health. Biomedicines. 2024 Feb 22;12(3):490. [Crossref]  [PubMed]  [PMC]
  43. Chu DM, Meyer KM, Prince AL, Aagaard KM. Impact of maternal nutrition in pregnancy and lactation on offspring gut microbial composition and function. Gut Microbes. 2016 Nov;7(6):459-470. [Crossref]  [PubMed]  [PMC]
  44. Brink LR, Mercer KE, Piccolo BD, Chintapalli SV, Elolimy A, Bowlin AK, et al. Neonatal diet alters fecal microbiota and metabolome profiles at different ages in infants fed breast milk or formula. Am J Clin Nutr. 2020 Jun1;111(6):1190-1202. [Crossref]  [PubMed]  [PMC]
  45. Gregory KE, Samuel BS, Houghteling P, Shan G, Ausubel FM, Sadreyev RI, et al. Influence of maternal breast milk ingestion on acquisition of the intestinal microbiome in preterm infants. Microbiome. 2016 Dec 30;4(1):68. [Crossref]  [PubMed]  [PMC]
  46. Chi C, Li C, Buys N, Wang W, Yin C, Sun J. Effects of Probiotics in Preterm Infants: A Network Meta-analysis. Pediatrics. 2021 Jan;147(1):e20200706. [Crossref]  [PubMed]
  47. Vievermanns K, Dierikx TH, Oldenburger NJ, Jamaludin FS, Niemarkt HJ, de Meij TGJ. Effect of probiotic supplementation on the gut microbiota in very preterm infants: a systematic review. Arch Dis Child Fetal Neonatal Ed. 2024 Jun 26:fetalneonatal-2023-326691. [Link]
  48. Nolan LS, Rimer JM, Good M. The Role of Human Milk Oligosaccharides and Probiotics on the Neonatal Microbiome and Risk of Necrotizing Enterocolitis: A Narrative Review. Nutrients. 2020 Oct 6;12(10):3052. [Crossref]  [PubMed]  [PMC]
  49. Li X, Li X, Shang Q, Gao Z, Hao F, Guo H, et al. Fecal microbiota transplantation (FMT) could reverse the severity of experimental necrotizing enterocolitis (NEC) via oxidative stress modulation. Free Radic Biol Med. 2017 Jul;108:32-43. [Crossref]  [PubMed]